{ "_id": "6ad99d8c021a938ed758e2d8", "Package": "CIMEHR", "Type": "Package", "Title": "Longitudinal EHR Analysis with Informative Visits and Recording", "Version": "0.2.0", "Authors@R": "c(\nperson(given = \"Cheng-Han\", family = \"Yang\",\nemail = \"chenghanyang728@gmail.com\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-4161-3140\")),\nperson(given = \"Yiren\", family = \"Hou\",\nemail = \"yiren.hou@yale.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0009-0005-0422-4268\"))\n)", "Description": "Longitudinal outcomes in electronic health records (EHR)\nare seen only when a patient visits and the outcome is recorded\nat that visit, and both processes can depend on the patient's\nlatent health. The package fits the CIMEHR estimator for this\nsetting, a three-stage procedure linked by a shared latent\nfactor: a frailty partial likelihood for the visiting process,\na pairwise likelihood for the recording (observation) process,\nand an estimating equation for the outcome. Spline and\nhigher-order Laplace variants are included, together with\ncomparison methods (summary statistics, linear mixed models,\nLin-Ying, Liang, pairwise likelihood, joint models, inverse\nintensity rate ratio weighting and balancing, multiple\nimputation, linear increments and EHRJoint) behind one common\ninterface. Methods are described in Yang, Shi, and Mukherjee\n(2026) .", "License": "MIT + file LICENSE", "Copyright": "See file inst/COPYRIGHTS.", "URL": "https://github.com/ysph-dsde/CIMEHR", "BugReports": "https://github.com/ysph-dsde/CIMEHR/issues", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "LazyData": "true", "NeedsCompilation": "yes", "Collate": "'RcppExports.R' 'cimehr_shared.R' 'cimehr.R' 'cimehr_hl.R'\n'cimehr_hl_moments.R' 'cimehr_identification.R'\n'cimehr_numerics.R' 'cimehr_prediction.R' 'cimehr_spline.R'\n'cimehr_spline_hl.R' 'cimehr_zero.R' 'curve_bootstrap.R'\n'curve_refit.R' 'dispatch.R' 'ehrjoint.R'\n'ehrjoint_prediction.R' 'iirr_balancing_marker.R'\n'iirr_balancing_visit.R' 'iirr_weighting_marker.R'\n'iirr_weighting_visit.R' 'input_data.R' 'jmvl_g_marker.R'\n'jmvl_g_visit.R' 'li_iirr.R' 'li_liang.R' 'li_lmm.R'\n'li_reconstruction.R' 'liang_completed_followup.R'\n'liang_marker.R' 'liang_trajectory.R' 'liang_visit.R'\n'lin_ying_marker.R' 'lin_ying_visit.R' 'lmm.R' 'meanfit.R'\n'mi_iirr.R' 'mi_liang.R' 'mi_lmm.R' 'native_adapter.R'\n'oa_lmm.R' 'outcome_summary.R' 'pairlik.R' 'registry.R'\n'stages.R' 'stages_spline.R' 'summary_max.R' 'summary_mean.R'\n'summary_median.R' 'summary_min.R' 'trajectory_api.R'\n'va_lmm.R'", "Config/roxygen2/version": "8.1.1", "Repository": "https://ysph-dsde.r-universe.dev", "Date/Publication": "2026-10-22 01:29:32 UTC", "RemoteUrl": "https://github.com/ysph-dsde/cimehr", "RemoteRef": "HEAD", "RemoteSha": "94144caa6c96988d4b94d8a84930e4c99f43f459", "Packaged": { "Date": "2026-10-22 05:13:28 UTC", "User": "root" }, "Author": "Cheng-Han Yang [aut, cre] (ORCID:\n),\nYiren Hou [aut] (ORCID: )", "Maintainer": "Cheng-Han Yang ", "_user": "ysph-dsde", "_type": "src", "_file": "CIMEHR_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/7dc8817927fca9ceba0d4ca06202aa7c452bbbe6a82960d63fecd9a14e727a95", "_filesize": 1601860, "_sha256": "7dc8817927fca9ceba0d4ca06202aa7c452bbbe6a82960d63fecd9a14e727a95", "_expires": "2027-01-30T05:22:19.000Z", "_created": "2026-10-22T05:13:28.000Z", "_published": "2026-10-22T05:22:20.801Z", "_upstream": "https://github.com/ysph-dsde/cimehr", "_status": "success", "_maintainer": { "name": "Cheng-Han Yang", "email": "chenghanyang728@gmail.com", "login": "cyang728", "description": "I am an Associate Research Sciesntist in Biostatistics program at Yale university. My research interests lie in EHR data analysis and survival analysis. 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